Publications are listed alphabetically, by year.

2007:

• Chandonia JM. 2007. StrBioLib: a Java library for development of custom computational structural biology applications. Bioinformatics [Preprint PDF]|[PubMed]|[abstract]

• Das D, Xu QS, Lee JY, Ankoudinova I, Huang C, ... Kim R, Kim SH. 2007. Crystal structure of the multidrug efflux transporter AcrB at 3.1A resolution reveals the N-terminal region with conserved amino acids. J Struct Biol 158:494-502. [PubMed]|[abstract]

• Das D, Hyun H, Lou Y, Yokota H, Kim R, Kim SH. 2007. Crystal structure of a novel single-stranded DNA binding protein from Mycoplasma pneumoniae. Proteins 67:776-82. [PubMed]

• Kim R. 2007. Protein expression in Escherichia coli. Chapter 2. Methods Express (M. Dyson, eds) Scion Publishing Limited.

• Lowery TJ, Pelton JG, Chandonia JM, Kim R, Yokota H, Wemmer DE. 2007. NMR structure of the N-terminal domain of the replication initiator protein DnaA. J Struct Funct Genomics [PubMed]|[abstract]

• Oganesyan V, Adams PD, Jancarik J, Kim R, Kim SH. 2007. Structure of O67745_AQUAE, a hypothetical protein from Aquifex aeolicus. Acta Crystallogr Sect F Struct Biol Cryst Commun 63:369-74. [PubMed]|[abstract]

• Oganesyan N, Ankoudinova I, Kim SH, Kim R. 2007. Effect of osmotic stress and heat shock in recombinant protein overexpression and crystallization. Protein Expr. & Purif. 52 (2): 280-5.

• Shin DH, Hou J, Chandonia JM, Das D, Choi IG, Kim R, Kim SH. 2007. Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center. J Struct Funct Genomics [PubMed]|[abstract]

• Shin DH, Proudfoot M, Lim HJ, Choi IK, Yokota H, ... Kim R, Kim SH. 2007. Structural and enzymatic characterization of DR1281: A calcineurin-like phosphoesterase from Deinococcus radiodurans. Proteins [PubMed]|[abstract]

• Xu QS, Ankoudinova I, Lou Y, Yokota H, Kim R, Kim SH. 2007. Crystal structure of a transcriptional activator of comK gene from Bacillus halodurans. Proteins [PubMed]

• Chandonia JM, Brenner SE. 2006. The impact of structural genomics: expectations and outcomes. Science 311:347-51. [PDF]|[Supplementary Info]|[PubMed]|[abstract]

• Chandonia JM, Kim SH, Brenner SE. 2005. Target selection and deselection at the Berkeley Structural Genomics Center. Proteins 62:356-370. [PDF]|[Supplementary Info]|[PubMed]|[abstract]

• Chandonia JM, Kim SH. 2006. Structural proteomics of minimal organisms: Conservation of protein fold usage and evolutionary implications. BMC Struct Biol 6:7. [PDF]|[PubMed]|[abstract]

• Kim JS, Shin DH, Pufan R, Huang C, Yokota H, Kim R, Kim SH. 2006. Crystal structure of ScpB from Chlorobium tepidum, a protein involved in chromosome partitioning. Proteins 62:322-8. [PubMed]|[abstract]

• Liu J, Oganesyan N, Shin DH, Jancarik J, Yokota H, Kim R, Kim SH. 2006. Structural characterization of an iron-sulfur cluster assembly protein IscU in a zinc-bound form. Proteins 63:1137. [PubMed]

• Shin DH, Kim JS, Yokota H, Kim R, Kim SH. 2006. Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae. Protein Sci 15:921-8. [PubMed]|[abstract]

• Sims GE, Kim SH. 2006. A method for evaluating the structural quality of protein models by using higher-order phi-psi pairs scoring. Proc Natl Acad Sci U S A 103:4428-32. [PubMed]|[abstract]

• Smith A, Chandonia JM, Brenner SE. 2006. ANDY: a general, fault-tolerant tool for database searching on computer clusters. Bioinformatics [PDF]|[Supplementary Info]|[PubMed]|[abstract]

• Chandonia JM, Brenner SE. 2005. Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches. Proteins 58:166-79. [PDF]|[Supplementary data]|[PubMed]|[abstract]

• Chandonia JM, Brenner SE. 2005. Update on the Pfam5000 Strategy for Selection of Structural Genomics Targets. Proceedings of the 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference, Shanghai, China [PDF]|[abstract]

• Chen S, Yakunin AF, Proudfoot M, Kim R, Kim SH. 2005. Structural and functional characterization of a 5,10-methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087). Proteins 61:433-43. [PubMed]|[abstract]

• Das D, Oganesyan N, Yokota H, Pufan R, Kim R, Kim SH. 2005. Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae. Proteins 58:504-8. [PubMed]

• Kim JS, DeGiovanni A, Jancarik J, Adams PD, Yokota H, Kim R, Kim SH. 2005. Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications. Proc Natl Acad Sci U S A 102:3248-53. [PubMed]|[abstract]

• Kim SH, Shin DH, Liu J, Oganesyan V, Chen S, Xu QS, Kim JS, Das D, Schulze-Gahmen U, Holbrook SR, Holbrook EL, Martinez BA, Oganesyan N, DeGiovanni A, Lou Y, Henriquez M, Huang C, Jancarik J, Pufan R, Choi IC, Chandonia JM, Hou J, Gold B, Yokota H, Brenner SE, Adams PD, Kim R. 2005. Structural genomics of minimal organisms and protein fold space. J Struct Funct Genomics 6:63-70. [PubMed]|[abstract]

• Liu J, Huang C, Shin DH, Yokota H, Jancarik J, ... Kim R, Kim SH. 2005. Crystal structure of a heat-inducible transcriptional repressor HrcA from Thermotoga maritima: structural insight into DNA binding and dimerization. J Mol Biol 350:987-96. [PubMed]|[abstract]

• Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH. 2005. Crystal structure of a PhoU protein homologue: a new class of metalloprotein containing multinuclear iron clusters. J Biol Chem 280:15960-6. [PubMed]|[abstract]

• Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH. 2005. Crystal structures of an NAD kinase from Archaeoglobus fulgidus in complex with ATP, NAD, or NADP. J Mol Biol 354:289-303. [PubMed]|[abstract]

• Oganesyan N, Kim SH, Kim R. 2005. On-column protein refolding for crystallization. J Struct Funct Genomics 6:177-82. [PubMed]|[abstract]

• Oganesyan V, Huang C, Adams PD, Jancarik J, Yokota HA, Kim R, Kim SH. 2005. Structure of a NAD kinase from Thermotoga maritima at 2.3 A resolution. Acta Crystallograph Sect F Struct Biol Cryst Commun 61:640-6. [PubMed]|[abstract]

• Oganesyan V, Oganesyan N, Adams PD, Jancarik J, Yokota HA, Kim R, Kim SH. 2005. Crystal structure of the "PhoU-like" phosphate uptake regulator from Aquifex aeolicus. J Bacteriol 187:4238-44. [PubMed]|[abstract]

• Pajon A, Ionides J, Diprose J, Fillon J, Fogh R, ... Stuart DI, Henrick K. 2005. Design of a data model for developing laboratory information management and analysis systems for protein production. Proteins 58:278-84. [PubMed]|[abstract]

• Pelton JG, Shi J, Yokota H, Kim R, Wemmer DE. 2005. NMR structure of hypothetical protein MG354 from Mycoplasma genitalium. Proteins 61:666-8.

• Schulze-Gahmen U, Aono S, Chen S, Yokota H, Kim R, Kim SH. 2005. Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function. Acta Crystallogr D Biol Crystallogr 61:1343-7. [PubMed]|[abstract]

• Shin DH, Oganesyan N, Jancarik J, Yokota H, Kim R, Kim SH. 2005. Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. J Biol Chem 280:18326-35. [PubMed]|[abstract]

• Shin DH, Lou Y, Jancarik J, Yokota H, Kim R, Kim SH. 2005. Crystal structure of TM1457 from Thermotoga maritima. J Struct Biol 152:113-7. [PubMed]|[abstract]

• Sims GE, Choi IG, Kim SH. 2005. Protein conformational space in higher order {phi}-{psi} maps. Proc Natl Acad Sci U S A [PubMed]|[abstract]

• Wang W, Kim R, Yokota H, Kim SH. 2005. Crystal structure of flavin binding to FAD synthetase of Thermotoga maritima. Proteins 58:246-8. [PubMed]

• Xu QS, Jancarik J, Lou Y, Kuznetsova K, Yakunin AF, ... Kim R, Kim SH. 2005. Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate. J Struct Funct Genomics 6:269-79. [PubMed]|[abstract]

• Zhang Y, Chandonia JM, Ding C, Holbrook SR. 2005. Comparative mapping of sequence-based and structure-based protein domains. BMC Bioinformatics 6:77. [PDF]|[PubMed]|[abstract]

• Adams M, Joachimiak A, Kim R, Montelione GT, Norvell J. 2004. Meeting review 2003 NIH Protein Structure Initiative Workshop in Protein Production and Crystallization for Structural and Functional Genomics. J Struct Funct Genomics 5:1-2. [PubMed]

• Busso D, Kim R, Kim SH. 2004. Using an Escherichia coli cell-free extract to screen for soluble expression of recombinant proteins. J Struct Funct Genomics 5:69-74. [PubMed]|[abstract]

• Card GL, England BP, Suzuki Y, Fong D, Powell B, ... Schlessinger J, Zhang KY. 2004. Structural basis for the activity of drugs that inhibit phosphodiesterases. Structure (Camb) 12:2233-47. [PubMed]|[abstract]

• Chandonia JM, Earnest TN, Brenner SE. 2004. Structural genomics and structural biology: compare and contrast. Genome Biol 5:343. [PDF]|[PubMed]

• Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE. 2004. The ASTRAL Compendium in 2004. Nucleic Acids Res 32 Database issue:D189-92. [PDF]|[PubMed]|[abstract]

• Chen S, Yakunin AF, Kuznetsova E, Busso D, Pufan R, ... Kim R, Kim SH. 2004. Structural and Functional Characterization of a Novel Phosphodiesterase from Methanococcus jannaschii. J Biol Chem 279:31854-62. [PubMed]|[abstract]

• Chen S, Jancarik J, Yokota H, Kim R, Kim SH. 2004. Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): a novel fold with a conserved sequence motif. Proteins 55:785-91. [PubMed]|[abstract]

• Chen S, Shin DH, Pufan R, Kim R, Kim SH. 2004. Crystal structure of methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087) at 2.2 A resolution. Proteins 56:839-43. [PubMed]

• Crooks GE, Hon G, Chandonia JM, Brenner SE. 2004. WebLogo: a sequence logo generator. Genome Res 14:1188-90. [PDF]|[PubMed]|[abstract]

• Grosse-Kunstleve RW, Sauter NK, Adams PD. 2004. Numerically stable algorithms for the computation of reduced unit cells. Acta Crystallogr A 60:1-6. [PubMed]|[abstract]

• Jancarik J, Pufan R, Hong C, Kim SH, Kim R. 2004. Optimum solubility (OS) screening: an efficient method to optimize buffer conditions for homogeneity and crystallization of proteins. Acta Crystallogr D Biol Crystallogr 60:1670-3. [PubMed]|[abstract]

• Liu J, Yokota H, Kim R, Kim SH. 2004. A conserved hypothetical protein from Mycoplasma genitalium shows structural homology to nusb proteins. Proteins 55:1082-6. [PubMed]

• Nguyen H, Martinez B, Oganesyan N, Kim R. 2004. An automated small-scale protein expression and purification screening provides beneficial information for protein production. J Struct Funct Genomics 5:23-7. [PubMed]|[abstract]

• Oganesyan V, Pufan R, DeGiovanni A, Yokota H, Kim R, Kim SH. 2004. Structure of the putative DNA-binding protein SP_1288 from Streptococcus pyogenes. Acta Crystallogr D Biol Crystallogr 60:1266-71. [PubMed]|[abstract]

• Oganesyan N, Kim SH, Kim R. 2004. On-column Chemical Refolding of Proteins. PharmaGenomics 4:22-26.

• Ranatunga W, Hill EE, Mooster JL, Holbrook EL, Schulze-Gahmen U, ... Brenner SE, Holbrook SR. 2004. Structural studies of the Nudix hydrolase DR1025 from Deinococcus radiodurans and its ligand complexes. J Mol Biol 339:103-16. [PubMed]|[abstract]

• Sauter NK, Grosse-Kunstlev RW, Adams PD. 2004. Robust indexing for automatic data collection. Journal of Applied Crystallography 37:399-409. [abstract]

• Shi J, Pelton JG, Cho HS, Wemmer DE. 2004. Protein signal assignments using specific labeling and cell-free synthesis. J Biomol NMR 28:235-47. [PubMed]|[abstract]

• Shin DH, Choi IG, Busso D, Jancarik J, Yokota H, Kim R, Kim SH. 2004. Structure of OsmC from Escherichia coli: a salt-shock-induced protein. Acta Crystallogr D Biol Crystallogr 60:903-11. [TXT]|[PubMed]|[abstract]

• Shin DH, Brandsen J, Jancarik J, Yokota H, Kim R, Kim SH. 2004. Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome. J Mol Biol 341:227-39. [PubMed]|[abstract]

• Shin DH, Lou Y, Jancarik J, Yokota H, Kim R, Kim SH. 2004. Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain. Proc Natl Acad Sci U S A 101:13198-203. [PubMed]|[abstract]

• Snell G, Cork C, Nordmeyer R, Cornell E, Meigs G, ... Stevens RC, Earnest T. 2004. Automated sample mounting and alignment system for biological crystallography at a synchrotron source. Structure (Camb) 12:537-45. [PubMed]|[abstract]

• Xu QS, Shin DH, Pufan R, Yokota H, Kim R, Kim SH. 2004. Crystal structure of a phosphotransacetylase from Streptococcus pyogenes. Proteins 55:479-81. [PubMed]

• Zhang KY, Card GL, Suzuki Y, Artis DR, Fong D, ... Schlessinger J, Bollag G. 2004. A glutamine switch mechanism for nucleotide selectivity by phosphodiesterases. Mol Cell 15:279-86. [PubMed]|[abstract]

2003:

• Busso D, Kim R, Kim SH. 2003. Expression of soluble recombinant proteins in a cell-free system using a 96-well format. J Biochem Biophys Methods 55:233-40. [PubMed]|[abstract]

• Choi IG, Shin DH, Brandsen J, Jancarik J, Busso D, ... Kim R, Kim SH. 2003. Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution. J Struct Funct Genomics 4:31-4. [PubMed]

• Grosse-Kunstleve RW, Adams PD. 2003. State of the Toolbox: an overview of the Crystallography Toolbox (CCTBX). IUCr Computing Commission Newsletter:28-38.

• Grosse-Kunstleve RW, Wong B, Adams PD. 2003. cctbx news: Fast triplet generator for direct methods, Gallery of direct-space asymmetric units, et. al. IUCr Computing Commission Newsletter:10-16.

• Hou J, Sims GE, Zhang C, Kim SH. 2003. A global representation of the protein fold space. Proc Natl Acad Sci U S A 100:2386-90. [PubMed]|[abstract]

• Kim SH, Shin DH, Choi IG, Schulze-Gahmen U, Chen S, Kim R. 2003. Structure-based functional inference in structural genomics. J Struct Funct Genomics 4:129-35. [PubMed]|[abstract]

• Kim R, Lai L, Lee HH, Cheong GW, Kim KK, ... Marqusee S, Kim SH. 2003. On the mechanism of chaperone activity of the small heat-shock protein of Methanococcus jannaschii. Proc Natl Acad Sci U S A 100:8151-5. [PubMed]|[abstract]

• Liu J, Wang W, Shin DH, Yokota H, Kim R, Kim SH. 2003. Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus at 2.6 A resolution: a novel methyltransferase fold. Proteins 53:326-8. [PubMed]

• Moshinsky DJ, Bellamacina CR, Boisvert DC, Huang P, Hui T, ... Kim SH, Rice AG. 2003. SU9516: biochemical analysis of cdk inhibition and crystal structure in complex with cdk2. Biochem Biophys Res Commun 310:1026-31. [PubMed]|[abstract]

• Oganesyan V, Busso D, Brandsen J, Chen S, Jancarik J, Kim R, Kim SH. 2003. Structure of the hypothetical protein AQ_1354 from Aquifex aeolicus. Acta Crystallogr D Biol Crystallogr 59:1219-23. [PubMed]|[abstract]

• Rubin SM, Pelton JG, Yokota H, Kim R, Wemmer DE. 2003. Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog. J Struct Funct Genomics 4:235-43. [TXT]|[PubMed]|[abstract]

• Schulze-Gahmen U, Pelaschier J, Yokota H, Kim R, Kim SH. 2003. Crystal structure of a hypothetical protein, TM841 of Thermotoga maritima, reveals its function as a fatty acid-binding protein. Proteins 50:526-30. [PubMed]|[abstract]

• Shin DH, Nguyen HH, Jancarik J, Yokota H, Kim R, Kim SH. 2003. Crystal structure of NusA from Thermotoga maritima and functional implication of the N-terminal domain. Biochemistry 42:13429-37. [PubMed]|[abstract]

• Shin DH, Roberts A, Jancarik J, Yokota H, Kim R, Wemmer DE, Kim SH. 2003. Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima. Protein Sci 12:1464-72. [PubMed]|[abstract]

• Sims GE, Kim SH. 2003. Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes. Nucleic Acids Res 31:5607-16. [PubMed]|[abstract]

• Wang W, Kim R, Jancarik J, Yokota H, Kim SH. 2003. Crystal structure of a flavin-binding protein from Thermotoga maritima. Proteins 52:633-5. [PubMed]

• Zhang C, Kim SH. 2003. Overview of structural genomics: from structure to function. Curr Opin Chem Biol 7:28-32. [PubMed]|[abstract]

2002:

• Busso D, Kim R, Kim SH. 2002. Screening for soluble expression of recombinant proteins using the RTS 100 HY in a 96-well format. Biochemica:33-35.

• Chandonia JM, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE. 2002. ASTRAL compendium enhancements. Nucleic Acids Res 30:260-3. [PDF]|[PubMed]|[abstract]

• Grosse-Kunstleve RW, Adams PD. 2002. Algorithms for deriving crystallographic space-group information. II. Treatment of special positions. Acta Crystallogr A 58:60-5. [PubMed]|[abstract]

• Grosse-Kunstleve RW, Sauter NK, Moriarty NW, Adams PD. 2002. The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework. J Appl Cryst:126-36.

• Huang L, Hung L, Odell M, Yokota H, Kim R, Kim SH. 2002. Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii. J Struct Funct Genomics 2:121-7. [PubMed]|[abstract]

• Kim SH, Wang W, Kim KK. 2002. Dynamic and clustering model of bacterial chemotaxis receptors: structural basis for signaling and high sensitivity. Proc Natl Acad Sci U S A 99:11611-5. [PubMed]|[abstract]

• Martinez-Cruz LA, Dreyer MK, Boisvert DC, Yokota H, Martinez-Chantar ML, Kim R, Kim SH. 2002. Crystal structure of MJ1247 protein from M. jannaschii at 2.0 A resolution infers a molecular function of 3-hexulose-6-phosphate isomerase. Structure (Camb) 10:195-204. [PubMed]|[abstract]

• Schulze-Gahmen U, Kim SH. 2002. Structural basis for CDK6 activation by a virus-encoded cyclin. Nat Struct Biol 9:177-81. [PubMed]|[abstract]

• Shin DH, Yokota H, Kim R, Kim SH. 2002. Crystal structure of a conserved hypothetical protein from Escherichia coli. J Struct Funct Genomics 2:53-66. [PubMed]|[abstract]

• Shin DH, Yokota H, Kim R, Kim SH. 2002. Crystal structure of conserved hypothetical protein Aq1575 from Aquifex aeolicus. Proc Natl Acad Sci U S A 99:7980-5. [PubMed]|[abstract]

• Wang W, Cho HS, Kim R, Jancarik J, Yokota H, ... Wemmer DE, Kim SH. 2002. Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states. J Mol Biol 319:421-31. [PubMed]|[abstract]

• Zhang C, Hou J, Kim SH. 2002. Fold prediction of helical proteins using torsion angle dynamics and predicted restraints. Proc Natl Acad Sci U S A 99:3581-5. [PubMed]|[abstract]

2001:

• Cave JW, Cho HS, Batchelder AM, Yokota H, Kim R, Wemmer DE. 2001. Solution nuclear magnetic resonance structure of a protein disulfide oxidoreductase from Methanococcus jannaschii. Protein Sci 10:384-96. [PubMed]|[abstract]

• Cho H, Wang W, Kim R, Yokota H, Damo S, ... Kustu S, Yan D. 2001. BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: structure of a BeF(3)(-) complex with phosphoserine phosphatase. Proc Natl Acad Sci U S A 98:8525-30. [PubMed]|[abstract]

• Dreyer MK, Borcherding DR, Dumont JA, Peet NP, Tsay JT, ... Shen J, Kim SH. 2001. Crystal structure of human cyclin-dependent kinase 2 in complex with the adenine-derived inhibitor H717. J Med Chem 44:524-30. [PubMed]|[abstract]

• Du X, Wang W, Kim R, Yakota H, Nguyen H, Kim SH. 2001. Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii. Biochemistry 40:14166-72. [PubMed]|[abstract]

• Du X, Frei H, Kim SH. 2001. Comparison of nitrophenylethyl and hydroxyphenacyl caging groups. Biopolymers 62:147-9. [PubMed]|[abstract]

• Frankenberg RJ, Hsu TS, Yakota H, Kim R, Clark DS. 2001. Chemical denaturation and elevated folding temperatures are required for wild-type activity and stability of recombinant Methanococcus jannaschii 20S proteasome. Protein Sci 10:1887-96. [PubMed]|[abstract]

• Grigoriev IV, Zhang C, Kim SH. 2001. Sequence-based detection of distantly related proteins with the same fold. Protein Eng 14:455-8. [PubMed]

• Kim VN, Kataoka N, Dreyfuss G. 2001. Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex. Science 293:1832-6. [PubMed]|[abstract]

2000:

• Adler M, Davey DD, Phillips GB, Kim SH, Jancarik J, ... Light DR, Whitlow M. 2000. Preparation, characterization, and the crystal structure of the inhibitor ZK-807834 (CI-1031) complexed with factor Xa. Biochemistry 39:12534-42. [PubMed]|[abstract]

• Du X, Frei H, Kim SH. 2000. The mechanism of GTP hydrolysis by Ras probed by Fourier transform infrared spectroscopy. J Biol Chem 275:8492-500. [PubMed]|[abstract]

• Du X, Choi IG, Kim R, Wang W, Jancarik J, Yokota H, Kim SH. 2000. Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution. Proc Natl Acad Sci U S A 97:14079-84. [PubMed]|[abstract]

• Falke JJ, Kim SH. 2000. Structure of a conserved receptor domain that regulates kinase activity: the cytoplasmic domain of bacterial taxis receptors. Curr Opin Struct Biol 10:462-9. [PubMed]|[abstract]

• Kim R, Yokota H, Kim SH. 2000. Electrophoresis of proteins and protein-protein complexes in a native agarose gel. Anal Biochem 282:147-9. [PubMed]

• Kim SH. 2000. Structural genomics of microbes: an objective. Curr Opin Struct Biol 10:380-3. [abstract]

• Lai L, Yokota H, Hung LW, Kim R, Kim SH. 2000. Crystal structure of archaeal RNase HII: a homologue of human major RNase H. Structure Fold Des 8:897-904. [PubMed]|[abstract]

• Meijer L, Thunnissen AM, White AW, Garnier M, Nikolic M, ... Kim SH, Pettit GR. 2000. Inhibition of cyclin-dependent kinases, GSK-3beta and CK1 by hymenialdisine, a marine sponge constituent. Chem Biol 7:51-63. [PubMed]|[abstract]

• Zhang C, Kim SH. 2000. The anatomy of protein beta-sheet topology. J Mol Biol 299:1075-89. [PubMed]|[abstract]

• Zhang C, Kim SH. 2000. Environment-dependent residue contact energies for proteins. Proc Natl Acad Sci U S A 97:2550-5. [PubMed]|[abstract]

• Zhang C, Kim SH. 2000. A comprehensive analysis of the Greek key motifs in protein beta-barrels and beta-sandwiches. Proteins 40:409-19. [PubMed]|[abstract]

• Zhang C, Kim SH. 2000. The effect of dynamic receptor clustering on the sensitivity of biochemical signaling. Pac Symp Biocomput:353-64. [PubMed]|[abstract]

1999:

• Grigoriev IV, Kim SH. 1999. Detection of protein fold similarity based on correlation of amino acid properties. Proc Natl Acad Sci U S A 96:14318-23. [PubMed]|[abstract]

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